CDS

Accession Number TCMCG017C10672
gbkey CDS
Protein Id OMP00714.1
Location join(85677..85787,86387..86548,86692..86773,86873..87103,87224..87379,87665..87858,87941..88024,88150..88269,88372..88558,88663..88823,88927..88998,89136..89212,89438..89632,90000..90072,90229..90315,90655..90792,90874..91076,91171..91336,91601..91735)
GeneID InterPro:IPR001841
Organism Corchorus olitorius
locus_tag COLO4_12451

Protein

Length 877aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215141, BioSample:SAMN03160584
db_source AWUE01014922.1
Definition Zinc finger, RING-type [Corchorus olitorius]
Locus_tag COLO4_12451

EGGNOG-MAPPER Annotation

COG_category O
Description E3 ubiquitin-protein ligase BRE1-like
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko04121        [VIEW IN KEGG]
KEGG_ko ko:K10696        [VIEW IN KEGG]
EC 2.3.2.27        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0002376        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004842        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005739        [VIEW IN EMBL-EBI]
GO:0006325        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006513        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006952        [VIEW IN EMBL-EBI]
GO:0006955        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0007346        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009607        [VIEW IN EMBL-EBI]
GO:0009620        [VIEW IN EMBL-EBI]
GO:0009653        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009814        [VIEW IN EMBL-EBI]
GO:0009817        [VIEW IN EMBL-EBI]
GO:0009965        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010016        [VIEW IN EMBL-EBI]
GO:0010154        [VIEW IN EMBL-EBI]
GO:0010162        [VIEW IN EMBL-EBI]
GO:0010228        [VIEW IN EMBL-EBI]
GO:0010389        [VIEW IN EMBL-EBI]
GO:0010390        [VIEW IN EMBL-EBI]
GO:0010431        [VIEW IN EMBL-EBI]
GO:0010564        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016567        [VIEW IN EMBL-EBI]
GO:0016569        [VIEW IN EMBL-EBI]
GO:0016570        [VIEW IN EMBL-EBI]
GO:0016574        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0019787        [VIEW IN EMBL-EBI]
GO:0021700        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0022611        [VIEW IN EMBL-EBI]
GO:0032446        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032504        [VIEW IN EMBL-EBI]
GO:0033523        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0042802        [VIEW IN EMBL-EBI]
GO:0042803        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043207        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045087        [VIEW IN EMBL-EBI]
GO:0046983        [VIEW IN EMBL-EBI]
GO:0048316        [VIEW IN EMBL-EBI]
GO:0048366        [VIEW IN EMBL-EBI]
GO:0048367        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0048608        [VIEW IN EMBL-EBI]
GO:0048609        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048827        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050832        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051301        [VIEW IN EMBL-EBI]
GO:0051302        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051707        [VIEW IN EMBL-EBI]
GO:0051726        [VIEW IN EMBL-EBI]
GO:0051781        [VIEW IN EMBL-EBI]
GO:0061458        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070647        [VIEW IN EMBL-EBI]
GO:0071695        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0098542        [VIEW IN EMBL-EBI]
GO:0099402        [VIEW IN EMBL-EBI]
GO:0140096        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1901987        [VIEW IN EMBL-EBI]
GO:1901990        [VIEW IN EMBL-EBI]
GO:1902749        [VIEW IN EMBL-EBI]
GO:1905392        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGGGAGCACTGGTGAGGCTGACCGAAAACGCCGTCACTTTAGCTCCATATCACCCACTGCTGTTGCCGCAAAGAAGCAACCATCTTTCCCAGTTTCTGAGGAGAAAAAGCTTGATGCTAAAGTTCTACAATTTCAGAATCAGAAGCTTCTACAGAAGTTAGAGGCTCAGAAAGTCGAGTATTCTTCTCTTGAAAACAAGTTTTTTCAACTGAAGGAGAAGCAAAAGCCATATGATTCTACATTGAATGCAGTCAATAAGTCTTGGGAAGCACTGCTTACTAACTTGGAGTCACGTTGCATCCAAACAAGAGAGTCCAGCAGACAAGATGTTGGACGTGCCCCAAGTATGGATGATGGGGCTCCATCTCCTACTGAGGATGTTTTTCTTAGCCGACTCATGGAGAAAGGTGCTACTGAAAGTTCCTCTTCCGATAATTGCCCTGAGCAGATGGAAGAAGATAGAGAACAGACTGCCTCTGAGAAGACTAGGAACATTTTACACAATATAGTAGTTTCAGTTAATGGCCTATGGTGTCTGAAGGATGGATTATATGCTGCAGCTCTGAAATTGCATTCAGATGATGGTGGGCTGAAGGCATCTAGTGAACTCAAGTCAGAAGTTAAGAATTTAAGATTAGCAATAGGTGATATTCATTTGAAACATCGATCTTTGGCTAGAGAATTGCAGATTCACAGAGATATTGATGCAAAGAATAAAGCTGAGCTTAAACGTCTAAAAGGTGAATTGGAGAGTGCAGTTGCTGAACTGCAAGAAAGTAATTGCAAACTGGCAAGTCTTAAAACGGAAAGTGATGCAACTAAAGGGGCATTTTTCTCTGTCTTAAACCTTAGCAGTAAGCACGTTGTTGGTGATAAAGTGAAAGACAAGCAGAGGGATCTGCAAGAAATGGAATCCACCCTCAAAGAGTTGTTGGAACAAGCTTCCTCTCGACTAACAGAACTAAATGGTCTTCATGAAGAAAGAATAAAAATACTACAACAGTTATCAAATTTGCAGAACACGTTGAAGAGTGTAAAGTGTATTTCTTCTTCCCAAGCATACCTTTTGGTGAGAGATCAACTAGAAAAGTCAAAGTCAGAAGTTTTCCATTATCAAGATTTATTTGAGAAACTACAGGTTGAGAAAGATAACCTGGCTTGGAGAGAAAAGGAGTTGAGTGTGAAAATGGACATAGCTGATGTTTTTCGGAGATCTTTGGCAGTTTCTGATTCTAGAGCTTCTCATCTGGGGGCAGAGATACAGCGACAAATTGATGAAAGAAAGAGAATTGAAGCTAAGCTGGAAGAGGCATCCATAGAACCAGGAAGAAAGGAAATAATTGCAGAATTTAAAAGCTTGCTTTCTTCATTTCCTGAGGAAATGAGTTCAATGCAGAGTCAATTAGGTAAATACAAAGAGGCTGCTGTGGATATTCATTCTCTCCGTGCCGATGTGCAATCTCTTTCCAGTATTCTTGATAGGAAGGCAAAAGAATGTGAGAGTTTGTCTGTCAGATCTGCTGATCAAGTTTCTGAGATGCATAAGTTGCAAGCCATGGTGCAGGATTTGAAGGACAGTGATGAGGAGTTAAAGTTGATATTGGAGATGTATAGGCGTGAGTCTACTGATTCAAGAGATGTTTTGGAAGCGAGAGATTCAGAATACAAGGCATGGGCTCATGTTCAAAGTTTGAAATCCTCTCTTGATGAGCAAAATTTGGAATTACGTGTTAAGACAGCCAATGAAGCCGAAGCAATGTCCCAACAAAGGTTGGCCGCTGCAGAAGCTGAAATTGCTGACTTACGACAGAAACTAGAGGCTTCTAAGAGGGACAAGGCTAAGCTTTCTGATGCTTTGAAGTCTAAAAATGAAGAAAATGAGGCTTACTTATCCGAAATAGAGTCAATTGGACAGGCATATGATGACATGCAAACTCAGAACCAGCAGCTCTTGCTGCAAATTACAGAGAGAGATGACTATAACATCAAGCTTGTTTTGGAAGGTGTGAAGGCAAAACAGCTGCAAGAAGCTCTACTCTTGGAGAAACATACCATAGAGAAGGAGATTCAGCAAGCCAATGCGACCCTTGAATTTTATGATATGAAAGCTGCAAGAATTGAGGATCAGCTGAGGTTCTGCTCAGACCAGGCTCAGAAACTTGCAGAAGAAAGATTTCAAAACTCAGTTTTATTGGAAAACACACAGAAGCGATTGTCAGATGCAAGAAAAGCTTCTAATCAAGCAAGGGAGTCACTGGAGGACTCTCAGTCTAACATTGAGAAAAGTCGTGTAGCTTTGGTGGAGTTGCAAATAGAAATAGAGAGGGAAAAGTTCAAAAAGAAAAGAATTGAGGAGGAGTCAGAAGTCGTGAGAAGGAAGGTAGTGCGTCTTCAAGCTGAGACAGAAGGATCATCAATTGTTGAAAGGCTTCAACATGAACTTAAAGAGTACAAGGAAATACTGAAGTGCAGTATCTGCCTTGACAGACCAAAAGAGGTTGTCATTACGAAGTGCTACCACCTATTCTGCAACCCTTGCGTACACAAGATAATTACCGAAAGTCGTCACCGCAAGTGTCCAGTATGTTCTGCAAGCTTCGGTGCTAATGACGTGAAGCCTGTTTATATTTGA
Protein:  
MGSTGEADRKRRHFSSISPTAVAAKKQPSFPVSEEKKLDAKVLQFQNQKLLQKLEAQKVEYSSLENKFFQLKEKQKPYDSTLNAVNKSWEALLTNLESRCIQTRESSRQDVGRAPSMDDGAPSPTEDVFLSRLMEKGATESSSSDNCPEQMEEDREQTASEKTRNILHNIVVSVNGLWCLKDGLYAAALKLHSDDGGLKASSELKSEVKNLRLAIGDIHLKHRSLARELQIHRDIDAKNKAELKRLKGELESAVAELQESNCKLASLKTESDATKGAFFSVLNLSSKHVVGDKVKDKQRDLQEMESTLKELLEQASSRLTELNGLHEERIKILQQLSNLQNTLKSVKCISSSQAYLLVRDQLEKSKSEVFHYQDLFEKLQVEKDNLAWREKELSVKMDIADVFRRSLAVSDSRASHLGAEIQRQIDERKRIEAKLEEASIEPGRKEIIAEFKSLLSSFPEEMSSMQSQLGKYKEAAVDIHSLRADVQSLSSILDRKAKECESLSVRSADQVSEMHKLQAMVQDLKDSDEELKLILEMYRRESTDSRDVLEARDSEYKAWAHVQSLKSSLDEQNLELRVKTANEAEAMSQQRLAAAEAEIADLRQKLEASKRDKAKLSDALKSKNEENEAYLSEIESIGQAYDDMQTQNQQLLLQITERDDYNIKLVLEGVKAKQLQEALLLEKHTIEKEIQQANATLEFYDMKAARIEDQLRFCSDQAQKLAEERFQNSVLLENTQKRLSDARKASNQARESLEDSQSNIEKSRVALVELQIEIEREKFKKKRIEEESEVVRRKVVRLQAETEGSSIVERLQHELKEYKEILKCSICLDRPKEVVITKCYHLFCNPCVHKIITESRHRKCPVCSASFGANDVKPVYI